Zanni Group Papers

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Fulmer EC, Ding F, Mukherjee P, Zanni MT.  2005.  Vibrational Dynamics of Ions in Glass from Fifth-Order Two-Dimensional Infrared Spectroscopy. Physical Review Letters. 94(6) Abstract
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Middleton CT, Buchanan LE, Dunkelberger EB, Zanni MT.  2011.  Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. The Journal of Physical Chemistry Letters. 2:2357-2361. Abstract
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Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT.  2012.  Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human  D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences. 109(9):3329-3334. Abstract
Shim S-H, Gupta R, Ling YL, Strasfeld DB, Raleigh DP, Zanni MT.  2009.  Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proceedings of the National Academy of Sciences. 106(16):6614-6619. Abstract
Middleton CT, Marek P, Cao P, Chiu C-cheng, Singh S, Woys AM, De Pablo JJ, Raleigh DP, Zanni MT.  2012.  Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4:355-360. Abstract
Ling YL, Strasfeld DB, Shim S-H, Raleigh DP, Zanni MT.  2009.  Two-dimensional Infrared Spectroscopy Provides Evidence of an Intermediate in the Membrane-catalyzed Assembly of Diabetic Amyloid. The Journal of Physical Chemistry B. 113(8):2498-2505. Abstract
Xiong W, Laaser JE, Paoprasert P, Franking RA, Hamers RJ, Gopalan P, Zanni MT.  2009.  Transient 2D IR Spectroscopy of Charge Injection in Dye-Sensitized Nanocrystalline Thin Films. Journal of the American Chemical Society. 131(50):18040-18041. Abstract
Strasfeld DB, Ling YL, Shim S-H, Zanni MT.  2008.  Tracking Fiber Formation in Human Islet Amyloid Polypeptide with Automated 2D-IR Spectroscopy. Journal of the American Chemical Society. 130(21):6698-6699. Abstract
Laaser JE, Xiong W, Zanni MT.  2011.  Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. The Journal of Physical Chemistry B. 115(11):2536-2546. Abstract
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Meng F, Abedini A, Plesner A, Middleton CT, Potter KJ, Zanni MT, Verchere BC, Raleigh DP.  2010.  The Sulfated Triphenyl Methane Derivative Acid Fuchsin Is a Potent Inhibitor of Amyloid Formation by Human Islet Amyloid Polypeptide and Protects against the Toxic Effects of Amyloid Formation. Journal of Molecular Biology. 400(3):555-566. Abstract
Mukherjee P, Kass I, Arkin IT, Zanni MT.  2006.  Structural Disorder of the CD3ζ Transmembrane Domain Studied with 2D IR Spectroscopy and Molecular Dynamics Simulations. The Journal of Physical Chemistry B. 110(48):24740-24749. Abstract
Moran SD, Decatur SM, Zanni MT.  2012.  Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13 C Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 134(44):18410-18416.
Woys AM, Mukherjee S, Skoff DR, Moran SD, Zanni MT.  2013.  A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. The Journal of Physical Chemistry B. 117(17):5009-5018. Abstract
Strasfeld DB, Ling YL, Gupta R, Raleigh DP, Zanni MT.  2009.  Strategies for Extracting Structural Information from 2D IR Spectroscopy of Amyloid: Application to Islet Amyloid Polypeptide. The Journal of Physical Chemistry B. 113(47):15679-15691. Abstract
Reddy AS, Wang L, Singh S, Ling YL, Buchanan LE, Zanni MT, Skinner JL, De Pablo JJ.  2010.  Stable and Metastable States of Human Amylin in Solution. Biophysical Journal. 99(7):2208-2216. Abstract
Reddy AS, Wang L, Lin Y-S, Ling Y, Chopra M, Zanni MT, Skinner JL, De Pablo JJ.  2010.  Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment. Biophysical Journal. 98(3):443-451. Abstract
Mukherjee P, Krummel AT, Fulmer EC, Kass I, Arkin IT, Zanni MT.  2004.  Site-specific vibrational dynamics of the CD3ζ membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy. The Journal of Chemical Physics. 120(21):10215. Abstract
Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT.  In Press.  Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics.
Xiong W, Zanni MT.  2008.  Signal enhancement and background cancellation in collinear two-dimensional spectroscopies. Optics Letters. 33(12):1371. Abstract
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Marek P, Mukherjee S, Zanni MT, Raleigh DP.  2010.  Residue-Specific, Real-Time Characterization of Lag-Phase Species and Fibril Growth During Amyloid Formation: A Combined Fluorescence and IR Study of p-Cyanophenylalanine Analogs of Islet Amyloid Polypeptide. Journal of Molecular Biology. 400(4):878-888. Abstract
Middleton CT, Woys AM, Mukherjee SS, Zanni MT.  2010.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods. 52(1):12-22. Abstract
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Grechko M, Zanni MT.  2012.  Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to α-helices. The Journal of Chemical Physics. 137(18):184202. Abstract
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Fulmer EC, Mukherjee P, Krummel AT, Zanni MT.  2004.  A pulse sequence for directly measuring the anharmonicities of coupled vibrations: Two-quantum two-dimensional infrared spectroscopy. The Journal of Chemical Physics. 120(17):8067. Abstract
Middleton CT, Strasfeld DB, Zanni MT.  2009.  Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Optics Express. 17(17):14526. Abstract
Mukherjee P, Kass I, Arkin IT, Zanni MT.  2006.  Picosecond dynamics of a membrane protein revealed by 2D IR. Proceedings of the National Academy of Sciences. 103(10):3528-3533. Abstract