Zanni Group Papers

Found 84 results
Kratochvil H.T., Ha D.G., Zanni M.T.  2015.  Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores. 143(104201)
Oudenhoven TA, Joo Y, Laaser JE, Gopalan P, Zanni M T..  2015.  Dye aggregation identified by vibrational coupling using 2D IR spectroscopy. 142(21):212449.
Mehlenbacher RD, McDonough TJ, Grechko M, Wu M-Y, Arnold MS, Zanni MT.  2015.  Energy transfer pathways in semiconducting carbon nanotubes revealed using two-dimensional white-light spectroscopy. 6:6732.
Chan GKL, Witkowski A, Gantz DL, Zhang TO, Zanni MT, Jayaraman S, Cavigiolio G.  2015.  Myeloperoxidase-mediated Methionine Oxidation Promotes an Amyloidogenic Outcome for Apolipoprotein A-I. 290:10958-10971.
Ding B, Panahi A, Ho J-J, Laaser JE, Brooks, III CE, Zanni M T., Chen Z.  2015.  Probing Site-Specific Structural Information of Peptides at Model Membrane Interface In Situ. 137(2):10190–10198.
Ho J-J, Skoff DR, Ghosh A, Zanni M T..  2015.  Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy. 119(33):10586–10596.
Dunkelberger EB, Grechko M, Zanni M T..  2015.  Transition Dipoles from 1D and 2D Infrared Spectroscopy Help Reveal the Secondary Structures of Proteins: Application to Amyloids. 119(44):14065–14075.
Ghosh A, Ho J-J, Serrano AL, Zhang T, Zanni MT.  2015.  Two-dimensional sum-frequency generation (2D SFG) spectroscopy: summary of principles and its application to amyloid fiber monolayers. 177:493-505.
Serrano AL, Ghosh A, Ostrander JS, Zanni MT.  2015.  Wide-field FTIR microscopy using mid-IR pulse shaping. 13(14):17815-17827.
Ghosh A, Wang J, Moroz YS, Korendovych IV, Zanni M, DeGrado WF, Gai F, Hochstrasser RM.  2014.  2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel. The Journal of Chemical Physics. 140(23):235105.
Moran SD, Zhang TO, Zanni MT.  2014.  An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin. Protein Science. 23(3):321–331.
Grechko M, Ye Y, Mehlenbacher RD, McDonough TJ, Wu M-Y, Jacobberger RM, Arnold MS, Zanni MT.  2014.  Diffusion Assisted Photoexcitation Transfer in Coupled Semiconducting Carbon Nanotube Thin Films. ACS Nano. 8(6):5383–5394.
Laaser JE, Christianson JR, Oudenhoven TA, Joo Y, Gopalan P, Schmidt JR, Zanni MT.  2014.  Dye Self-association Identified by Intermolecular Couplings Between Vibrational Modes as Revealed by Infrared Spectroscopy, and Implications for Electron Injection. The Journal of Physical Chemistry C. 118(11):5854–5861.
Shea MJ, Mehlenbacher RD, Zanni M T., Arnold MS.  2014.  Experimental Measurement of the Binding Configuration and Coverage of Chirality-Sorting Polyfluorenes on Carbon Nanotubes. 5(21):3742–3749.
Peran I, Oudenhoven TA, Woys AM, Watson MD, Zhang TO, Carrico I, Zanni MT, Raleigh DP.  2014.  A General Strategy for the Bio-orthogonal Incorporation of Strongly Absorbing, Solvation Sensitive Infrared Probes into Proteins.. The Journal of Physical Chemistry B. 118(28):7946–7953.
Moran SD, Zanni MT.  2014.  How to Get Insights into Amyloid Structure and Formation from Infrared Spectroscopy. The Journal of Physical Chemistry Letters. (5):1984–1993.
Zhang TO, Buchanan LE, Zanni MT.  2014.  Insights into amylin aggregation by 2D IR spectroscopy. Biomedical Spectroscopy and Imaging. 3(3):189-196.
Tu L-H, Serrano A L, Zanni M T, Raleigh D P..  2014.  Mutational Analysis of Preamyloid Intermediates: The Role of His-Tyr Interactions in Islet Amyloid Formation. Biophysical Journal. 106(7):1520-1527.
Buchanan LE, Carr J.K, Fluitt A.M, Hoganson A.J, Moran S.D, de Pablo J.J, Skinner J.L, Zanni M.T.  2014.  Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences. 111(16):5796–5801.
Laaser JE, Skoff DR, Ho J-J, Joo Y, Serrano AL, Steinkruger JD, Gopalan P, Gellman SH, Zanni MT.  2014.  Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide. Journal of the American Chemical Society. 136(3):956-962.
Dunkelberger EB, Woys AM, Zanni MT.  2013.  2D IR Cross Peaks Reveal Hydrogen–Deuterium Exchange with Single Residue Specificity. The Journal of Physical Chemistry B.
Moran SD, Zhang TO, Decatur SM, Zanni MT.  2013.  Amyloid Fiber Formation in Human γD-Crystallin Induced by UV-B Photodamage. Biochemistry. 52(36):6169–6181.
Laaser JE, Zanni MT.  2013.  Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. The Journal of Physical Chemistry A. 117(29):5875–5890.
Mukherjee SS, Skoff DR, Middleton CT, Zanni MT.  2013.  Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. J. Chem. Phys.. 139
Buchanan LE, Dunkelberger EB, Tran H.Q, Cheng P.-N., Chiu C.-C., Cao P., Raleigh D.P, de Pablo J.J, Nowick J.S, Zanni M.T.  2013.  Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient beta-sheet. Proceedings of the National Academy of Sciences. 110(48):19285–19290.
Mehlenbacher RD, Wu M-Y, Grechko M, Laaser JE, Arnold MS, Zanni MT.  2013.  Photoexcitation Dynamics of Coupled Semiconducting Carbon Nanotube Thin Films. Nano Letters. 13(4):1495-1501.
Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT.  2013.  Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics. 422(30):8-15.
Ding B, Laaser JE, Liu Y, Wang P, Zanni MT, Chen Z.  2013.  Site-Specific Orientation of an α-Helical Peptide Ovispirin-1 from Isotope-Labeled SFG Spectroscopy. The Journal of Physical Chemistry B. 117(47):14625-14634.
Woys AM, Mukherjee S, Skoff DR, Moran SD, Zanni MT.  2013.  A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. The Journal of Physical Chemistry B. 117(17):5009-5018.
Lam AR, Moran SD, Preketes NK, Zhang TO, Zanni MT, Mukamel S.  2013.  Study of the γD-Crystallin Protein Using Two-Dimensional Infrared (2DIR) Spectroscopy : Experiment and Simulation. The Journal of Physical Chemistry B. :130823100750005.
Dunkelberger EB, Buchanan LE, Marek PJ, Cao P, Raleigh DP, Zanni MT.  2012.  Deamidation accelerates amyloid formation and alters amylin fiber structure. Journal of the American Chemical Society. 134(30):12658-12667.
Manor J, Feldblum ES, Zanni MT, Arkin IT.  2012.  Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. The Journal of Physical Chemistry Letters. 3(7):939-944.
Woys AM, Almeida AM, Wang L, Chiu C-C, McGovern M, De Pablo JJ, Skinner JL, Gellman SH, Zanni MT.  2012.  Parallel β-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 134(46):19118-19128.
Grechko M, Zanni MT.  2012.  Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to α-helices. The Journal of Chemical Physics. 137(18):184202.
Moran SD, Decatur SM, Zanni MT.  2012.  Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13 C Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 134(44):18410-18416.
Middleton CT, Marek P, Cao P, Chiu C-C, Singh S, Woys AM, De Pablo JJ, Raleigh DP, Zanni MT.  2012.  Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4:355-360.
Moran SD, Woys AM, Buchanan LE, Bixby E., Decatur SM, Zanni MT.  2012.  Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human  D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences. 109(9):3329-3334.