Zanni Group Papers

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2014
Moran SD, Zhang TO, Zanni MT.  2014.  An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin. Protein Science. 23(3):321–331. Abstract
Laaser JE, Christianson JR, Oudenhoven TA, Joo Y, Gopalan P, Schmidt JR, Zanni MT.  2014.  Dye Self-association Identified by Intermolecular Couplings Between Vibrational Modes as Revealed by Infrared Spectroscopy, and Implications for Electron Injection. The Journal of Physical Chemistry C. 118(11):5854–5861. Abstract
Laaser JE, Skoff DR, Ho J-J, Joo Y, Serrano AL, Steinkruger JD, Gopalan P, Gellman SH, Zanni MT.  2014.  Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide. Journal of the American Chemical Society. 136(3):956-962. Abstract
Buchanan LE, Carr JK, Fluitt AM, Hoganson AJ, Moran SD, de Pablo JJ, Skinner JL, Zanni MT.  2014.  Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences. Abstract
2013
Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT.  2013.  Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics. 422(30):8-15. Abstract
Buchanan LE, Dunkelberger EB, Tran HQ, Cheng P-N, Chiu C-C, Cao P, Raleigh DP, de Pablo JJ, Nowick JS, Zanni MT.  2013.  Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient beta-sheet. Proceedings of the National Academy of Sciences. 110(48):19285–19290. Abstract
Ding B, Laaser JE, Liu Y, Wang P, Zanni MT, Chen Z.  2013.  Site-Specific Orientation of an α-Helical Peptide Ovispirin-1 from Isotope-Labeled SFG Spectroscopy. The Journal of Physical Chemistry B. 117(47):14625-14634. Abstract
Laaser JE, Zanni MT.  2013.  Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. The Journal of Physical Chemistry A. 117(29):5875–5890. Abstract
Mukherjee SS, Skoff DR, Middleton CT, Zanni MT.  2013.  Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. J. Chem. Phys.. 139 Abstract
Moran SD, Zhang TO, Decatur SM, Zanni MT.  2013.  Amyloid Fiber Formation in Human γD-Crystallin Induced by UV-B Photodamage. Biochemistry. 52(36):6169–6181. Abstract
Lam AR, Moran SD, Preketes NK, Zhang TO, Zanni MT, Mukamel S.  2013.  Study of the γD-Crystallin Protein Using Two-Dimensional Infrared (2DIR) Spectroscopy : Experiment and Simulation. The Journal of Physical Chemistry B. :130823100750005. Abstract
Dunkelberger EB, Woys AM, Zanni MT.  2013.  2D IR Cross Peaks Reveal Hydrogen–Deuterium Exchange with Single Residue Specificity. The Journal of Physical Chemistry B. Abstract
Mehlenbacher RD, Wu M-Y, Grechko M, Laaser JE, Arnold MS, Zanni MT.  2013.  Photoexcitation Dynamics of Coupled Semiconducting Carbon Nanotube Thin Films. Nano Letters. 13(4):1495-1501. Abstract
Woys AM, Mukherjee S, Skoff DR, Moran SD, Zanni MT.  2013.  A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. The Journal of Physical Chemistry B. 117(17):5009-5018. Abstract
2012
Middleton CT, Marek P, Cao P, Chiu C-cheng, Singh S, Woys AM, De Pablo JJ, Raleigh DP, Zanni MT.  2012.  Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4:355-360. Abstract
Woys AM, Almeida AM, Wang L, Chiu C-cheng, McGovern M, De Pablo JJ, Skinner JL, Gellman SH, Zanni MT.  2012.  Parallel β-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 134(46):19118-19128. Abstract
Grechko M, Zanni MT.  2012.  Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to α-helices. The Journal of Chemical Physics. 137(18):184202. Abstract
Moran SD, Decatur SM, Zanni MT.  2012.  Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13 C Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 134(44):18410-18416.
Dunkelberger EB, Buchanan LE, Marek PJ, Cao P, Raleigh DP, Zanni MT.  2012.  Deamidation accelerates amyloid formation and alters amylin fiber structure. Journal of the American Chemical Society. 134(30):12658-12667. Abstract
Manor J, Feldblum ES, Zanni MT, Arkin IT.  2012.  Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. The Journal of Physical Chemistry Letters. 3(7):939-944. Abstract
Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT.  2012.  Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human  D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences. 109(9):3329-3334. Abstract
2011
Xiong W, Laaser JE, Mehlenbacher RD, Zanni MT.  2011.  Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proceedings of the National Academy of Sciences. 108(52):20902-20907. Abstract
Middleton CT, Buchanan LE, Dunkelberger EB, Zanni MT.  2011.  Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. The Journal of Physical Chemistry Letters. 2:2357-2361. Abstract
Wang L, Middleton CT, Zanni MT, Skinner JL.  2011.  Development and Validation of Transferable Amide I Vibrational Frequency Maps for Peptides. The Journal of Physical Chemistry B. 115(13):3713-3724. Abstract
Laaser JE, Xiong W, Zanni MT.  2011.  Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. The Journal of Physical Chemistry B. 115(11):2536-2546. Abstract