Zanni Group Papers

Found 97 results

2017

Zhang TO, Alperstein AM, Zanni M T.. 2017. Amyloid β-Sheet Secondary Structure Identified in UV-Induced Cataracts of Porcine Lenses using 2D IR Spectroscopy. Journal of Molecular Biology.

Kearns NM, Mehlenbacher RD, Jones AC, Zanni M T.. 2017. Broadband 2D electronic spectrometer using white light and pulse shaping: noise and signal evaluation at 1 and 100 kHz. Optics Express. 25(7):7869-7883.

Ostrander JS, Knepper R, Tappan AS, Kay JJ, Zanni MT, Farrow DA. 2017. Energy Transfer Between Coherently Delocalized States in Thin Films of the Explosive Pentaerythritol Tetranitrate (PETN) Revealed by Two-Dimensional Infrared Spectroscopy. Journal of Physical Chemistry B.

Yano Y, Kondo K, Watanabe Y, Zhang TO, Ho J-J, Oishi S, Fujii N, Zanni M T., Matsuzaki K. 2017. GXXXG-Mediated Parallel and Antiparallel Dimerization of Transmembrane Helices and Its Inhibition by Cholesterol: Single-Pair FRET and 2D IR Studies. Angewandte.

Kratochvil H.T., Maj M., Matulef K., Annen A.W., Ostmeyer J., Perozo E., Roux B., Valiyaveetil F.I., Zanni M T.. 2017. Probing the effects of gating on the ion occupancy of the K+ channel selectivity filter using 2D IR spectroscopy . Journal of the American Chemical Society.

Wang J, Shea MJ, Flach JT, McDonough TJ, Way AJ, Zanni M T., Arnold MS. 2017. The Role of Defects as Exciton Quenching Sites in Carbon Nanotube Photovoltaics. Journal of Physical Chemistry C.

Schneider SH, Kratochvil H.T., Zanni M T., Boxer SG. 2017. Solvent Independent Anharmonicity for Carbonyl Oscillators. Journal of Physical Chemistry B.

McDonough TJ, Zhang L, Roy SS, Kearns NM, Arnold MS, Zanni MT, Andrew TL. 2017. Triplet exciton dissociation and electron extraction in graphene-templated pentacene observed with ultrafast spectroscopy. Phys. Chem. Chem. Phys..

Ghosh A, Ostrander JS, Zanni MT. 2017. Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy. Chemical Reviews.

2016

Ghosh A, Serrano AL, Oudenhoven TA, Ostrander JS, Eklund EC, Blair AF, Zanni M T.. 2016. Experimental implementations of 2D IR spectroscopy through a horizontal pulse shaper design and a focal plane array detector. Optics Letters. 41(3):524-527.

Kratochvil H.T., Carr J.K, Matulef K., Annen A.W., Li H., Maj M., Ostmeyer J., Serrano A L., Raghuraman H., Moran S.D et al.. 2016. Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy. Science. 353(6303):1040-1044.

Mehlenbacher RD, McDonough TJ, Kearns NM, Shea MJ, Joo Y, Gopalan P, Arnold MS, Zanni M T.. 2016. Polarization-Controlled Two-Dimensional White-Light Spectroscopy of Semiconducting Carbon Nanotube Thin Films. The Journal of Physical Chemistry C. 120(30):17069-17080.

Ostrander JS, Serrano AL, Ghosh A, Zanni M T.. 2016. Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy. ACS Photonics. 3(7):1315-1323.

Mehlenbacher RD, Wang J, Shea MJ, Flach JT, McDonough TJ, Wu M-Y, Arnold MS, Zanni M T.. 2016. Ultrafast Exciton Hopping Observed in Bare Semiconducting Carbon Nanotube Thin Films with Two-Dimensional White-Light Spectroscopy. The Journal of Physical Chemistry Letters. 7:2024-2031.

Roy S, Skoff DR, Perroni DV, Mondal J, Yethiraj A, Mahanthappa M, Zanni M T, Skinner JL. 2016. Water Dynamics in Gyroid Phases of Self-Assembled Gemini Surfactants. Journal of the American Chemical Society. 138(8):2472-2475.

2015

Kratochvil H.T., Ha D.G., Zanni M.T. 2015. Counting tagged molecules one by one: Quantitative photoactivation and bleaching of photoactivatable fluorophores. The Journal of Chemical Physics. 143(104201)

Oudenhoven TA, Joo Y, Laaser JE, Gopalan P, Zanni M T.. 2015. Dye aggregation identified by vibrational coupling using 2D IR spectroscopy. The Journal of Chemical Physics. 142(21):212449.

Mehlenbacher RD, McDonough TJ, Grechko M, Wu M-Y, Arnold MS, Zanni MT. 2015. Energy transfer pathways in semiconducting carbon nanotubes revealed using two-dimensional white-light spectroscopy. Nature Communications. 6:6732.

Chan GKL, Witkowski A, Gantz DL, Zhang TO, Zanni MT, Jayaraman S, Cavigiolio G. 2015. Myeloperoxidase-mediated Methionine Oxidation Promotes an Amyloidogenic Outcome for Apolipoprotein A-I. Journal of Biological Chemistry. 290:10958-10971.

Ding B, Panahi A, Ho J-J, Laaser JE, Brooks, III CE, Zanni M T., Chen Z. 2015. Probing Site-Specific Structural Information of Peptides at Model Membrane Interface In Situ. Journal of the American Chemical Society. 137(2):10190–10198.

Ho J-J, Skoff DR, Ghosh A, Zanni M T.. 2015. Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy. The Journal of Physical Chemistry B. 119(33):10586–10596.

Dunkelberger EB, Grechko M, Zanni M T.. 2015. Transition Dipoles from 1D and 2D Infrared Spectroscopy Help Reveal the Secondary Structures of Proteins: Application to Amyloids. Journal of Physical Chemistry B. 119(44):14065–14075.

Ghosh A, Ho J-J, Serrano AL, Zhang T, Zanni MT. 2015. Two-dimensional sum-frequency generation (2D SFG) spectroscopy: summary of principles and its application to amyloid fiber monolayers. The Royal Society of Chemistry. 177:493-505.

Serrano AL, Ghosh A, Ostrander JS, Zanni MT. 2015. Wide-field FTIR microscopy using mid-IR pulse shaping. Optics Express. 13(14):17815-17827.

2014

Ghosh A, Wang J, Moroz YS, Korendovych IV, Zanni M, DeGrado WF, Gai F, Hochstrasser RM. 2014. 2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel. The Journal of Chemical Physics. 140(23):235105.

Moran SD, Zhang TO, Zanni MT. 2014. An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin. Protein Science. 23(3):321–331.

Grechko M, Ye Y, Mehlenbacher RD, McDonough TJ, Wu M-Y, Jacobberger RM, Arnold MS, Zanni MT. 2014. Diffusion Assisted Photoexcitation Transfer in Coupled Semiconducting Carbon Nanotube Thin Films. ACS Nano. 8(6):5383–5394.

Laaser JE, Christianson JR, Oudenhoven TA, Joo Y, Gopalan P, Schmidt JR, Zanni MT. 2014. Dye Self-association Identified by Intermolecular Couplings Between Vibrational Modes as Revealed by Infrared Spectroscopy, and Implications for Electron Injection. The Journal of Physical Chemistry C. 118(11):5854–5861.

Shea MJ, Mehlenbacher RD, Zanni M T., Arnold MS. 2014. Experimental Measurement of the Binding Configuration and Coverage of Chirality-Sorting Polyfluorenes on Carbon Nanotubes. 5(21):3742–3749.

Peran I, Oudenhoven TA, Woys AM, Watson MD, Zhang TO, Carrico I, Zanni MT, Raleigh DP. 2014. A General Strategy for the Bio-orthogonal Incorporation of Strongly Absorbing, Solvation Sensitive Infrared Probes into Proteins.. The Journal of Physical Chemistry B. 118(28):7946–7953.

Moran SD, Zanni MT. 2014. How to Get Insights into Amyloid Structure and Formation from Infrared Spectroscopy. The Journal of Physical Chemistry Letters. (5):1984–1993.

Zhang TO, Buchanan LE, Zanni MT. 2014. Insights into amylin aggregation by 2D IR spectroscopy. Biomedical Spectroscopy and Imaging. 3(3):189-196.

Tu L-H, Serrano A L, Zanni M T, Raleigh D P.. 2014. Mutational Analysis of Preamyloid Intermediates: The Role of His-Tyr Interactions in Islet Amyloid Formation. Biophysical Journal. 106(7):1520-1527.

Buchanan LE, Carr J.K, Fluitt A.M, Hoganson A.J, Moran S.D, de Pablo J.J, Skinner J.L, Zanni M.T. 2014. Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences. 111(16):5796–5801.

Laaser JE, Skoff DR, Ho J-J, Joo Y, Serrano AL, Steinkruger JD, Gopalan P, Gellman SH, Zanni MT. 2014. Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide. Journal of the American Chemical Society. 136(3):956-962.

2013

Dunkelberger EB, Woys AM, Zanni MT. 2013. 2D IR Cross Peaks Reveal Hydrogen–Deuterium Exchange with Single Residue Specificity. The Journal of Physical Chemistry B.

Moran SD, Zhang TO, Decatur SM, Zanni MT. 2013. Amyloid Fiber Formation in Human γD-Crystallin Induced by UV-B Photodamage. Biochemistry. 52(36):6169–6181.

Laaser JE, Zanni MT. 2013. Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. The Journal of Physical Chemistry A. 117(29):5875–5890.

Mukherjee SS, Skoff DR, Middleton CT, Zanni MT. 2013. Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. J. Chem. Phys.. 139

Buchanan LE, Dunkelberger EB, Tran H.Q, Cheng P.-N., Chiu C.-C., Cao P., Raleigh D.P, de Pablo J.J, Nowick J.S, Zanni M.T. 2013. Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient beta-sheet. Proceedings of the National Academy of Sciences. 110(48):19285–19290.

Pages