Zanni Group Papers
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2014. Experimental Measurement of the Binding Configuration and Coverage of Chirality-Sorting Polyfluorenes on Carbon Nanotubes. The Journal of Physical Chemistry Letters. 5(21):3742-3749. Abstract
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2014. Insights into amylin aggregation by 2D IR spectroscopy. Biomedical Spectroscopy and Imaging. 3(3):189-196. Abstract
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2014. 2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel. The Journal of Chemical Physics. 140(23):235105. Abstract
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2014. Diffusion Assisted Photoexcitation Transfer in Coupled Semiconducting Carbon Nanotube Thin Films. ACS Nano. 8(6):5383–5394. Abstract
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2014. How to Get Insights into Amyloid Structure and Formation from Infrared Spectroscopy. The Journal of Physical Chemistry Letters. (5):1984–1993. Abstract
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2014. A General Strategy for the Bio-orthogonal Incorporation of Strongly Absorbing, Solvation Sensitive Infrared Probes into Proteins.. The Journal of Physical Chemistry B. 118(28):7946–7953. Abstract
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2014. Mutational Analysis of Preamyloid Intermediates: The Role of His-Tyr Interactions in Islet Amyloid Formation. Biophysical Journal. 106(7):1520-1527. Abstract
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2014. Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proceedings of the National Academy of Sciences. 111(16):5796–5801. Abstract
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2014. An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin. Protein Science. 23(3):321–331. Abstract
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2014. Dye Self-association Identified by Intermolecular Couplings Between Vibrational Modes as Revealed by Infrared Spectroscopy, and Implications for Electron Injection. The Journal of Physical Chemistry C. 118(11):5854–5861. Abstract
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2014. Two-Dimensional Sum-Frequency Generation Reveals Structure and Dynamics of a Surface-Bound Peptide. Journal of the American Chemical Society. 136(3):956-962. Abstract
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2013. Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics. 422(30):8-15. Abstract
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2013. Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient beta-sheet. Proceedings of the National Academy of Sciences. 110(48):19285–19290. Abstract
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2013. Site-Specific Orientation of an α-Helical Peptide Ovispirin-1 from Isotope-Labeled SFG Spectroscopy. The Journal of Physical Chemistry B. 117(47):14625-14634. Abstract
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2013. Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. The Journal of Physical Chemistry A. 117(29):5875–5890. Abstract
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2013. Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. J. Chem. Phys.. 139 Abstract
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2013. Amyloid Fiber Formation in Human γD-Crystallin Induced by UV-B Photodamage. Biochemistry. 52(36):6169–6181. Abstract
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2013. Study of the γD-Crystallin Protein Using Two-Dimensional Infrared (2DIR) Spectroscopy : Experiment and Simulation. The Journal of Physical Chemistry B. :130823100750005. Abstract
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2013. 2D IR Cross Peaks Reveal Hydrogen–Deuterium Exchange with Single Residue Specificity. The Journal of Physical Chemistry B. Abstract
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2013. Photoexcitation Dynamics of Coupled Semiconducting Carbon Nanotube Thin Films. Nano Letters. 13(4):1495-1501. Abstract
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2013. A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. The Journal of Physical Chemistry B. 117(17):5009-5018. Abstract
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2012. Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4:355-360. Abstract
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2012. Parallel β-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 134(46):19118-19128. Abstract
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2012. Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to α-helices. The Journal of Chemical Physics. 137(18):184202. Abstract
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2012. Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13 C Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 134(44):18410-18416.
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2012. Deamidation accelerates amyloid formation and alters amylin fiber structure. Journal of the American Chemical Society. 134(30):12658-12667. Abstract
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2012. Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. The Journal of Physical Chemistry Letters. 3(7):939-944. Abstract
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2012. Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences. 109(9):3329-3334. Abstract
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2011. Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proceedings of the National Academy of Sciences. 108(52):20902-20907. Abstract
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2011. Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. The Journal of Physical Chemistry Letters. 2:2357-2361. Abstract
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2011. Development and Validation of Transferable Amide I Vibrational Frequency Maps for Peptides. The Journal of Physical Chemistry B. 115(13):3713-3724. Abstract
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2011. Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. The Journal of Physical Chemistry B. 115(11):2536-2546. Abstract
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2011. 2DIR Spectroscopy of Human Amylin Fibrils Reflects Stable β-Sheet Structure. Journal of the American Chemical Society. Abstract
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2011. Examining Amyloid Structure and Kinetics with 1D and 2D Infrared Spectroscopy and Isotope Labeling. Protein Folding and Misfolding: Shining Light by Infrared Spectroscopy. 1:217-237.
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2010. Efficient Microwave-Assisted Synthesis of Human Islet Amyloid Polypeptide Designed to Facilitate the Specific Incorporation of Labeled Amino Acids. Organic Letters. 12(21):4848-4851. Abstract
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2010. Stable and Metastable States of Human Amylin in Solution. Biophysical Journal. 99(7):2208-2216. Abstract
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2010. Residue-Specific, Real-Time Characterization of Lag-Phase Species and Fibril Growth During Amyloid Formation: A Combined Fluorescence and IR Study of p-Cyanophenylalanine Analogs of Islet Amyloid Polypeptide. Journal of Molecular Biology. 400(4):878-888. Abstract
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2010. The Sulfated Triphenyl Methane Derivative Acid Fuchsin Is a Potent Inhibitor of Amyloid Formation by Human Islet Amyloid Polypeptide and Protects against the Toxic Effects of Amyloid Formation. Journal of Molecular Biology. 400(3):555-566. Abstract
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2010. Bridge-Dependent Interfacial Electron Transfer from Rhenium−Bipyridine Complexes to TiO 2 Nanocrystalline Thin Films. The Journal of Physical Chemistry C. 114(21):9898-9907. Abstract
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2010. 2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers. Journal of the American Chemical Society. 132(8):2832-2838. Abstract
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2010. Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment. Biophysical Journal. 98(3):443-451. Abstract
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2009. How to turn your pump–probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping. Physical Chemistry Chemical Physics. 11(5):748. Abstract
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2009. Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Optics Express. 17(17):14526. Abstract
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2009. Gating Mechanism of the Influenza A M2 Channel Revealed by 1D and 2D IR Spectroscopies. Structure. 17(2):247-254. Abstract
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2009. Transient 2D IR Spectroscopy of Charge Injection in Dye-Sensitized Nanocrystalline Thin Films. Journal of the American Chemical Society. 131(50):18040-18041. Abstract
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2009. Strategies for Extracting Structural Information from 2D IR Spectroscopy of Amyloid: Application to Islet Amyloid Polypeptide. The Journal of Physical Chemistry B. 113(47):15679-15691. Abstract
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2009. Mode selectivity with polarization shaping in the mid-IR. New Journal of Physics. 11(10):105046. Abstract
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2009. Automated 2D IR spectrometer mitigates the influence of high optical densities. Vibrational Spectroscopy. 50(1):136-142. Abstract
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2009. Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proceedings of the National Academy of Sciences. 106(16):6614-6619. Abstract
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2009. Two-dimensional Infrared Spectroscopy Provides Evidence of an Intermediate in the Membrane-catalyzed Assembly of Diabetic Amyloid. The Journal of Physical Chemistry B. 113(8):2498-2505. Abstract
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2009. Empirical Amide I Vibrational Frequency Map: Application to 2D-IR Line Shapes for Isotope-Edited Membrane Peptide Bundles †. The Journal of Physical Chemistry B. 113(3):592-602. Abstract
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2009. New Advances in Mid-IR Pulse Shaping and its Application to 2D IR Spectroscopy and Ground-State Coherent Control. Advances in Chemical Physics. 141:1-28.
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2008. Signal enhancement and background cancellation in collinear two-dimensional spectroscopies. Optics Letters. 33(12):1371. Abstract
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2008. Tracking Fiber Formation in Human Islet Amyloid Polypeptide with Automated 2D-IR Spectroscopy. Journal of the American Chemical Society. 130(21):6698-6699. Abstract
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2008. Evidence for Coupling between Nitrile Groups Using DNA Templates: A Promising New Method for Monitoring Structures with Infrared Spectroscopy. The Journal of Physical Chemistry B. 112(5):1336-1338. Abstract
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2007. Controlling Vibrational Excitation with Shaped Mid-IR Pulses. Physical Review Letters. 99(3) Abstract
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2007. Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping Technology. Optics Express. 15(25):16681. Abstract
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2007. Heterodyned 3D IR spectroscopy. Chemical Physics. 341(1-3):95-105. Abstract
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2007. Multidimensional Ultrafast Spectroscopy Special Feature: Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide. Proceedings of the National Academy of Sciences. 104(36):14197-14202. Abstract
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2006. Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation. Optics Letters. 31(6):838. Abstract
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2006. Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses. Optics Express. 14(26):13120. Abstract
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2006. Passively correcting phase drift in two-dimensional infrared spectroscopy. Optics Letters. 31(19):2918. Abstract
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2006. Interpreting DNA Vibrational Circular Dichroism Spectra Using a Coupling Model from Two-Dimensional Infrared Spectroscopy. The Journal of Physical Chemistry B. 110(48):24720-24727. Abstract
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2006. Structural Disorder of the CD3ζ Transmembrane Domain Studied with 2D IR Spectroscopy and Molecular Dynamics Simulations. The Journal of Physical Chemistry B. 110(48):24740-24749. Abstract
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2006. DNA Vibrational Coupling Revealed with Two-Dimensional Infrared Spectroscopy: Insight into Why Vibrational Spectroscopy Is Sensitive to DNA Structure. The Journal of Physical Chemistry B. 110(28):13991-14000. Abstract
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2006. Picosecond dynamics of a membrane protein revealed by 2D IR. Proceedings of the National Academy of Sciences. 103(10):3528-3533. Abstract
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2005. Heterodyned fifth-order 2D-IR spectroscopy of the azide ion in an ionic glass. The Journal of Chemical Physics. 122(3):034302. Abstract
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2005. Heterodyned fifth-order two-dimensional IR spectroscopy: Third-quantum states and polarization selectivity. The Journal of Chemical Physics. 123(9):094502. Abstract
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2005. Vibrational Dynamics of Ions in Glass from Fifth-Order Two-Dimensional Infrared Spectroscopy. Physical Review Letters. 94(6) Abstract
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2004. A pulse sequence for directly measuring the anharmonicities of coupled vibrations: Two-quantum two-dimensional infrared spectroscopy. The Journal of Chemical Physics. 120(17):8067. Abstract
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2004. Site-specific vibrational dynamics of the CD3ζ membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy. The Journal of Chemical Physics. 120(21):10215. Abstract
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2003. Inter and Intrastrand Vibrational Coupling in DNA Studied with Heterodyned 2D-IR Spectroscopy. The Journal of Physical Chemistry B. 107(35):9165-9169. Abstract