Zanni Group Papers

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In Press
Skoff DR, Laaser JE, Mukherjee SS, Middleton CT, Zanni MT.  In Press.  Simplified and economical 2D IR spectrometer design using a dual acousto-optic modulator. Chemical Physics.
Laaser JE, Zanni MT.  In Press.  Extracting Structural Information from the Polarization Dependence of One- and Two-Dimensional Sum Frequency Generation Spectra. The Journal of Physical Chemistry A. Abstract
2013
Dunkelberger EB, Woys AM, Zanni MT.  2013.  2D IR Cross Peaks Reveal Hydrogen–Deuterium Exchange with Single Residue Specificity. The Journal of Physical Chemistry B.
Mehlenbacher RD, Wu M-Y, Grechko M, Laaser JE, Arnold MS, Zanni MT.  2013.  Photoexcitation Dynamics of Coupled Semiconducting Carbon Nanotube Thin Films. Nano Letters. 13(4):1495-1501. Abstract
Woys AM, Mukherjee S, Skoff DR, Moran SD, Zanni MT.  2013.  A Strongly Absorbing Class of Non-Natural Labels for Probing Protein Electrostatics and Solvation with FTIR and 2D IR Spectroscopies. The Journal of Physical Chemistry B. 117(17):5009-5018. Abstract
2012
Middleton CT, Marek P, Cao P, Chiu C-cheng, Singh S, Woys AM, De Pablo JJ, Raleigh DP, Zanni MT.  2012.  Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nature Chemistry. 4:355-360. Abstract
Woys AM, Almeida AM, Wang L, Chiu C-cheng, McGovern M, De Pablo JJ, Skinner JL, Gellman SH, Zanni MT.  2012.  Parallel β-Sheet Vibrational Couplings Revealed by 2D IR Spectroscopy of an Isotopically Labeled Macrocycle: Quantitative Benchmark for the Interpretation of Amyloid and Protein Infrared Spectra. Journal of the American Chemical Society. 134(46):19118-19128. Abstract
Grechko M, Zanni MT.  2012.  Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: Application to α-helices. The Journal of Chemical Physics. 137(18):184202. Abstract
Moran SD, Decatur SM, Zanni MT.  2012.  Structural and Sequence Analysis of the Human γD-Crystallin Amyloid Fibril Core Using 2D IR Spectroscopy, Segmental 13 C Labeling, and Mass Spectrometry. Journal of the American Chemical Society. 134(44):18410-18416.
Dunkelberger EB, Buchanan LE, Marek PJ, Cao P, Raleigh DP, Zanni MT.  2012.  Deamidation accelerates amyloid formation and alters amylin fiber structure. Journal of the American Chemical Society. 134(30):12658-12667. Abstract
Manor J, Feldblum ES, Zanni MT, Arkin IT.  2012.  Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. The Journal of Physical Chemistry Letters. 3(7):939-944. Abstract
Moran SD, Woys AM, Buchanan LE, Bixby E, Decatur SM, Zanni MT.  2012.  Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human  D-crystallin amyloid fibrils. Proceedings of the National Academy of Sciences. 109(9):3329-3334. Abstract
2011
Xiong W, Laaser JE, Mehlenbacher RD, Zanni MT.  2011.  Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proceedings of the National Academy of Sciences. 108(52):20902-20907. Abstract
Middleton CT, Buchanan LE, Dunkelberger EB, Zanni MT.  2011.  Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. The Journal of Physical Chemistry Letters. 2:2357-2361. Abstract
Wang L, Middleton CT, Zanni MT, Skinner JL.  2011.  Development and Validation of Transferable Amide I Vibrational Frequency Maps for Peptides. The Journal of Physical Chemistry B. 115(13):3713-3724. Abstract
Laaser JE, Xiong W, Zanni MT.  2011.  Time-Domain SFG Spectroscopy Using Mid-IR Pulse Shaping: Practical and Intrinsic Advantages. The Journal of Physical Chemistry B. 115(11):2536-2546. Abstract
Wang L, Middleton CT, Singh S, Reddy AS, Woys AM, Strasfeld DB, Marek P, Raleigh DP, De Pablo JJ, Zanni MT et al..  2011.  2DIR Spectroscopy of Human Amylin Fibrils Reflects Stable β-Sheet Structure. Journal of the American Chemical Society. Abstract
Buchanan LE, Dunkelberger EB, Zanni MT.  2011.  Examining Amyloid Structure and Kinetics with 1D and 2D Infrared Spectroscopy and Isotope Labeling. Protein Folding and Misfolding: Shining Light by Infrared Spectroscopy. 1:217-237.
2010
Middleton CT, Woys AM, Mukherjee SS, Zanni MT.  2010.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods. 52(1):12-22. Abstract
Marek P, Woys AM, Sutton K, Zanni MT, Raleigh DP.  2010.  Efficient Microwave-Assisted Synthesis of Human Islet Amyloid Polypeptide Designed to Facilitate the Specific Incorporation of Labeled Amino Acids. Organic Letters. 12(21):4848-4851. Abstract
Reddy AS, Wang L, Singh S, Ling YL, Buchanan LE, Zanni MT, Skinner JL, De Pablo JJ.  2010.  Stable and Metastable States of Human Amylin in Solution. Biophysical Journal. 99(7):2208-2216. Abstract
Marek P, Mukherjee S, Zanni MT, Raleigh DP.  2010.  Residue-Specific, Real-Time Characterization of Lag-Phase Species and Fibril Growth During Amyloid Formation: A Combined Fluorescence and IR Study of p-Cyanophenylalanine Analogs of Islet Amyloid Polypeptide. Journal of Molecular Biology. 400(4):878-888. Abstract
Meng F, Abedini A, Plesner A, Middleton CT, Potter KJ, Zanni MT, Verchere BC, Raleigh DP.  2010.  The Sulfated Triphenyl Methane Derivative Acid Fuchsin Is a Potent Inhibitor of Amyloid Formation by Human Islet Amyloid Polypeptide and Protects against the Toxic Effects of Amyloid Formation. Journal of Molecular Biology. 400(3):555-566. Abstract
Paoprasert P, Laaser JE, Xiong W, Franking RA, Hamers RJ, Zanni MT, Schmidt JR, Gopalan P.  2010.  Bridge-Dependent Interfacial Electron Transfer from Rhenium−Bipyridine Complexes to TiO 2 Nanocrystalline Thin Films. The Journal of Physical Chemistry C. 114(21):9898-9907. Abstract
Woys AM, Lin Y-S, Reddy AS, Xiong W, De Pablo JJ, Skinner JL, Zanni MT.  2010.  2D IR Line Shapes Probe Ovispirin Peptide Conformation and Depth in Lipid Bilayers. Journal of the American Chemical Society. 132(8):2832-2838. Abstract